Transcript: lnc-APELA-1:2

Basic information

LNCipedia transcript ID: lnc-APELA-1:2 
LNCipedia gene ID: lnc-APELA-1
Location (hg19): chr4:165816674-165820086
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 553 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000505269; ENST00000505269.1; RP11-366M4.3-004; OTTHUMT00000364316.1; NONHSAT099085
Alternative gene names: ENSG00000248329; RP11-366M4.3; ENSG00000248329.1; OTTHUMG00000161255.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.1652 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APELA-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C4orf39-1:4
3.1 lnc-C4orf39-1:4
4.0 lnc-C4orf39-1:4
4.1 lnc-C4orf39-1:4
5.0 lnc-C4orf39-1:4
5.1 lnc-CLCN3-37:13
5.2 lnc-APELA-1:2