Transcript: lnc-API5-4:5

Basic information

LNCipedia transcript ID: lnc-API5-4:5 
LNCipedia gene ID: lnc-API5-4
Ensembl Gene ID: ENSG00000255279
Ensembl Transcript ID: ENST00000526179
Location (hg19): chr11:41877896-41897547
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 431 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000526179; ENST00000526179.1; RP11-375D13.4-001; OTTHUMT00000389468.1; NONHSAT018900
Alternative gene names: ENSG00000255279; RP11-375D13.4; ENSG00000255279.1; OTTHUMG00000166378.1; AC023442.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.1753 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-API5-4:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-API5-3:5
3.1 lnc-API5-4:5
4.0 lnc-API5-4:5
4.1 lnc-API5-4:5
5.0 lnc-API5-4:5
5.1 lnc-CAPRIN1-55:6
5.2 lnc-API5-4:5