Transcript: lnc-APOB-5:6

Basic information

LNCipedia transcript ID: lnc-APOB-5:6 
LNCipedia gene ID: lnc-APOB-5
Ensembl Gene ID: ENSG00000235537
Ensembl Transcript ID: ENST00000458359
Location (hg19): chr2:21853420-21859181
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 539 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000458359; ENST00000458359.1; AC009411.2-001; OTTHUMT00000324014.1; NONHSAT069499
Alternative gene names: ENSG00000235537; AC009411.2; ENSG00000235537.1; OTTHUMG00000151806.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.4958 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APOB-5:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-APOB-3:1
3.1 lnc-APOB-4:1
4.0 lnc-APOB-5:6
4.1 lnc-APOB-5:6
5.0 lnc-APOB-5:6
5.1 lnc-DNAJC27-59:6
5.2 lnc-APOB-5:6