Transcript: lnc-APPL2-1:1

Basic information

LNCipedia transcript ID: lnc-APPL2-1:1 
LNCipedia gene ID: lnc-APPL2-1
Ensembl Gene ID: ENSG00000257642
Ensembl Transcript ID: ENST00000549251
RefSeq ID: NR_131986
Location (hg19): chr12:105698645-105720795
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 549 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000549251.1; RP11-474B16.1-001; OTTHUMT00000406307.1; NONHSAT030446; NR_131986.1
Alternative gene names: ENSG00000257642.1; RP11-474B16.1; OTTHUMG00000169859.1; KCCAT198; AC011313.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.9595 non-coding 
CPAT coding probability 4.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APPL2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-APPL2-1:1
4.0 lnc-APPL2-1:1
4.1 lnc-APPL2-1:1
5.0 lnc-APPL2-1:1
5.1 lnc-APPL2-5:1
5.2 lnc-APPL2-1:1