Transcript: lnc-APTX-3:1

Basic information

LNCipedia transcript ID: lnc-APTX-3:1 
LNCipedia gene ID: lnc-APTX-3
Location (hg19): chr9:33025348-33039905
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2242 bp
Exons: 9
Sources: NONCODE v4
Alternative transcript names: NONHSAT130700
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 159.1861 coding 
CPAT coding probability 11.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-APTX-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-APTX-3:1
4.0 lnc-APTX-3:1
4.1 lnc-APTX-3:1
5.0 lnc-APTX-3:1
5.1 lnc-CD72-66:1
5.2 lnc-APTX-3:1