Transcript: lnc-ARAP2-4:1

Basic information

LNCipedia transcript ID: lnc-ARAP2-4:1 
LNCipedia gene ID: lnc-ARAP2-4
Location (hg19): chr4:34834396-34848387
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 243 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008462; NONHSAT095985
Alternative gene names: XLOC_003922; linc-CCKAR-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.1495 non-coding 
CPAT coding probability 2.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARAP2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARAP2-2:1
3.1 lnc-ARAP2-4:1
4.0 lnc-ARAP2-4:1
4.1 lnc-ARAP2-4:1
5.0 lnc-ARAP2-4:1
5.1 lnc-GABRA4-74:1
5.2 lnc-ARAP2-4:1