Transcript: lnc-ARF5-1:1

Basic information

LNCipedia transcript ID: lnc-ARF5-1:1 
LNCipedia gene ID: lnc-ARF5-1
Ensembl Gene ID: ENSG00000226770
Ensembl Transcript ID: ENST00000448311
RefSeq ID: NR_110024
Location (hg19): chr7:127116937-127125858
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 957 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00013077; ENST00000448311; ENST00000448311.1; AC000124.1-001; OTTHUMT00000138623.2; NONHSAT123140; NR_110024; NR_110024.1
Alternative gene names: XLOC_006238; linc-ARF5-1; ENSG00000226770; AC000124.1; ENSG00000226770.1; OTTHUMG00000064344.2; LOC100506682


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.8787 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARF5-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARF5-1:1
3.1 lnc-ARF5-1:1
4.0 lnc-ARF5-1:1
4.1 lnc-ARF5-1:1
5.0 lnc-ARF5-1:1
5.1 lnc-TSPAN33-45:1
5.2 lnc-ARF5-1:1