Transcript: lnc-ARF5-2:1

Basic information

LNCipedia transcript ID: lnc-ARF5-2:1 
LNCipedia gene ID: lnc-ARF5-2
Ensembl Gene ID: ENSG00000224138
Ensembl Transcript ID: ENST00000418215
Location (hg19): chr7:126990182-126991577
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 516 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013076; ENST00000418215.1; AC000123.4-001; OTTHUMT00000308984.1; NONHSAT123137
Alternative gene names: XLOC_006237; linc-ARF5-2; ENSG00000224138.1; AC000123.4; OTTHUMG00000148663.1; AC000123.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -138.4149 non-coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARF5-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARF5-2:1
3.1 lnc-ARF5-2:1
4.0 lnc-ARF5-2:1
4.1 lnc-ARF5-2:1
5.0 lnc-ARF5-2:1
5.1 lnc-TSPAN33-49:1
5.2 lnc-ARF5-2:1