Transcript: lnc-ARF5-3:1

Basic information

LNCipedia transcript ID: lnc-ARF5-3:1 
LNCipedia gene ID: lnc-ARF5-3
Ensembl Gene ID: ENSG00000236340
Ensembl Transcript ID: ENST00000413812
RefSeq ID: NR_110194
Location (hg19): chr7:126855181-126869975
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1912 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000413812.1; AC000099.1-001; OTTHUMT00000138168.2; NONHSAT123132; NR_110194; NR_110194.1
Alternative gene names: ENSG00000236340.1; AC000099.1; OTTHUMG00000063970.2; ENSG00000236340.5; LOC101928333


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.0739 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARF5-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARF5-3:1
4.0 lnc-ARF5-3:1
4.1 lnc-ARF5-3:1
5.0 lnc-ARF5-3:1
5.1 lnc-TSPAN33-52:1
5.2 lnc-ARF5-3:1