Transcript: lnc-ARHGAP10-2:2

Basic information

LNCipedia transcript ID: lnc-ARHGAP10-2:2 
LNCipedia gene ID: lnc-ARHGAP10-2
Ensembl Gene ID: ENSG00000250357
Ensembl Transcript ID: ENST00000504874
Location (hg19): chr4:149614184-149615475
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 518 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007654; ENST00000504874; ENST00000504874.1; RP11-503L19.1-001; OTTHUMT00000364994.1; NONHSAT098701
Alternative gene names: XLOC_003729; linc-DCLK2-5; ENSG00000250357; RP11-503L19.1; ENSG00000250357.1; OTTHUMG00000161457.1; AC108935.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -220.5737 non-coding 
CPAT coding probability 4.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGAP10-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARHGAP10-1:2
3.1 lnc-ARHGAP10-2:2
4.0 lnc-ARHGAP10-2:2
4.1 lnc-ARHGAP10-2:2
5.0 lnc-ARHGAP10-2:2
5.1 lnc-C4orf51-29:2
5.2 lnc-ARHGAP10-2:2