Transcript: lnc-ARHGAP26-4:16

Basic information

LNCipedia transcript ID: lnc-ARHGAP26-4:16 
LNCipedia gene ID: lnc-ARHGAP26-4
Location (hg19): chr5:141704859-141843619
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 590 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000231185.2|ENST00000510311.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -6.7655 non-coding 
CPAT coding probability 1.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGAP26-4:16 yes no no no

Available literature

  1. Dudek (2017), Identification of long non-coding RNAs that stimulate cell survival in bladder cancer., Oncotarget
  2. Shen (2016), Downregulated Expression of Long Non-Coding RNA LOC101926975 Impairs both Cell Proliferation and Cell Cycle and Its Clinical Implication in Hirschsprung Disease Patients., Int J Med Sci
  3. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ARHGAP26-4:16
5.0 lnc-ARHGAP26-4:16
5.1 lnc-PCDHGA7-23:9
5.2 lnc-ARHGAP26-4:16