Transcript: lnc-ARHGAP26-4:35

Basic information

LNCipedia transcript ID: lnc-ARHGAP26-4:35 
LNCipedia gene ID: lnc-ARHGAP26-4
Ensembl Gene ID: ENSG00000261757
Ensembl Transcript ID: ENST00000566527
Location (hg19): chr5:142083347-142084986
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1640 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566527.1; AC005592.3-001; OTTHUMT00000423225.1; NONHSAT104322
Alternative gene names: ENSG00000261757.1; AC005592.3; OTTHUMG00000173470.1; AC005592.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -82.0129 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGAP26-4:35 no no no no

Available literature

  1. Dudek (2017), Identification of long non-coding RNAs that stimulate cell survival in bladder cancer., Oncotarget
  2. Shen (2016), Downregulated Expression of Long Non-Coding RNA LOC101926975 Impairs both Cell Proliferation and Cell Cycle and Its Clinical Implication in Hirschsprung Disease Patients., Int J Med Sci
  3. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARHGAP26-3:1
4.0 lnc-ARHGAP26-3:1
4.1 lnc-ARHGAP26-4:35
5.0 lnc-ARHGAP26-4:35
5.1 lnc-PCDHGA7-23:34
5.2 lnc-ARHGAP26-4:35