Transcript: lnc-ARHGAP26-4:4

Basic information

LNCipedia transcript ID: lnc-ARHGAP26-4:4 
LNCipedia gene ID: lnc-ARHGAP26-4
Location (hg19): chr5:141747402-141757087
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 939 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010121; NONHSAT104309
Alternative gene names: XLOC_004587; linc-ARHGAP26-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.2084 non-coding 
CPAT coding probability 2.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGAP26-4:4 no no no no

Available literature

  1. Dudek (2017), Identification of long non-coding RNAs that stimulate cell survival in bladder cancer., Oncotarget
  2. Shen (2016), Downregulated Expression of Long Non-Coding RNA LOC101926975 Impairs both Cell Proliferation and Cell Cycle and Its Clinical Implication in Hirschsprung Disease Patients., Int J Med Sci
  3. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NDFIP1-4:1
3.1 lnc-ARHGAP26-4:4
4.0 lnc-ARHGAP26-4:4
4.1 lnc-ARHGAP26-4:4
5.0 lnc-ARHGAP26-4:4
5.1 lnc-PCDHGA7-23:13
5.2 lnc-ARHGAP26-4:4