Transcript: lnc-ARHGAP26-4:7

Basic information

LNCipedia transcript ID: lnc-ARHGAP26-4:7 
HGNC Gene Symbol: lnc-ARHGAP26-4    
HGNC Full Gene Name: SPRY4 antisense RNA 1
Ensembl Gene ID: ENSG00000231185
Ensembl Transcript ID: ENST00000414314
Location (hg19): chr5:141961413-142006755
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 521 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000414314.1; AC005592.2-003; OTTHUMT00000276971.1; NONHSAT104316
Alternative gene names: ENSG00000231185.2; AC005592.2; OTTHUMG00000133693.3; ENSG00000231185.6; SPRY4-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -200.6735 non-coding 
CPAT coding probability 1.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGAP26-4:7 yes no no no

Available literature

  1. Dudek (2017), Identification of long non-coding RNAs that stimulate cell survival in bladder cancer., Oncotarget
  2. Shen (2016), Downregulated Expression of Long Non-Coding RNA LOC101926975 Impairs both Cell Proliferation and Cell Cycle and Its Clinical Implication in Hirschsprung Disease Patients., Int J Med Sci
  3. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARHGAP26-4:7
4.0 lnc-ARHGAP26-4:7
4.1 lnc-ARHGAP26-4:7
5.0 lnc-ARHGAP26-4:7
5.1 lnc-PCDHGA7-23:28
5.2 lnc-ARHGAP26-4:7