Transcript: lnc-ARHGAP28-10:5

Basic information

LNCipedia transcript ID: lnc-ARHGAP28-10:5 
LNCipedia gene ID: lnc-ARHGAP28-10
Ensembl Gene ID: ENSG00000264449
Ensembl Transcript ID: ENST00000580845
Location (hg19): chr18:5887541-5889517
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 521 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580845.1; RP11-945C19.4-002; OTTHUMT00000441934.1; ENST00000580845.5
Alternative gene names: ENSG00000264449.1; RP11-945C19.4; OTTHUMG00000178433.2; ENSG00000264449.5; AP005433.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.9092 non-coding 
CPAT coding probability 2.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGAP28-10:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP001496.1-10:4
4.0 lnc-AP001496.1-10:4
4.1 lnc-AP001496.1-10:4
5.0 lnc-AP001496.1-10:4
5.1 lnc-RIOK3-250:4
5.2 lnc-ARHGAP28-10:5