Transcript: lnc-ARHGAP28-10:9

Basic information

LNCipedia transcript ID: lnc-ARHGAP28-10:9 
LNCipedia gene ID: lnc-ARHGAP28-10
Location (hg19): chr18:5895638-5914106
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4071 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000035044.1|MICT00000158114.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.07 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGAP28-10:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AP001496.1-10:8
5.0 lnc-AP001496.1-10:8
5.1 lnc-RIOK3-250:8
5.2 lnc-ARHGAP28-10:9