Transcript: lnc-ARHGAP29-1:1

Basic information

LNCipedia transcript ID: lnc-ARHGAP29-1:1 
LNCipedia gene ID: lnc-ARHGAP29-1
Ensembl Gene ID: ENSG00000236098
Ensembl Transcript ID: ENST00000414039
Location (hg19): chr1:94784035-94790125
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 592 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000574; ENST00000414039; ENST00000414039.1; RP11-148B18.4-001; OTTHUMT00000029386.1; NONHSAT004582
Alternative gene names: XLOC_000920; linc-ARHGAP29-1; ENSG00000236098; RP11-148B18.4; ENSG00000236098.1; OTTHUMG00000010651.1; AC097059.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -161.576 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGAP29-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARHGAP29-1:1
3.1 lnc-ARHGAP29-1:1
4.0 lnc-ARHGAP29-1:1
4.1 lnc-ARHGAP29-1:1
5.0 lnc-ARHGAP29-1:1
5.1 lnc-GCLM-15:1
5.2 lnc-ARHGAP29-1:1