Transcript: lnc-ARHGEF26-1:1

Basic information

LNCipedia transcript ID: lnc-ARHGEF26-1:1 
LNCipedia gene ID: lnc-ARHGEF26-1
Ensembl Gene ID: ENSG00000243486
Ensembl Transcript ID: ENST00000463297
Location (hg19): chr3:153599315-153658625
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 703 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005630; ENST00000463297; ENST00000463297.1; RP11-217E22.5-001; OTTHUMT00000356697.1; NONHSAT092792
Alternative gene names: XLOC_002885; linc-ARHGEF26-1; ENSG00000243486; RP11-217E22.5; ENSG00000243486.1; OTTHUMG00000159649.1; AC068985.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.2255 non-coding 
CPAT coding probability 2.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGEF26-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARHGEF26-1:1
3.1 lnc-ARHGEF26-1:1
4.0 lnc-ARHGEF26-1:1
4.1 lnc-ARHGEF26-1:1
5.0 lnc-ARHGEF26-1:1
5.1 lnc-LEKR1-29:1
5.2 lnc-ARHGEF26-1:1