Transcript: lnc-ARHGEF28-2:1

Basic information

LNCipedia transcript ID: lnc-ARHGEF28-2:1 
LNCipedia gene ID: lnc-ARHGEF28-2
Location (hg19): chr5:73407471-73408058
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 540 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00009425; ENST00000507323; ENST00000507323.1; RP11-158D20.1-001; OTTHUMT00000368998.1; NONHSAT102147
Alternative gene names: XLOC_004428; linc-HEXB-2; ENSG00000250336; RP11-158D20.1; ENSG00000250336.1; OTTHUMG00000162461.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.7686 non-coding 
CPAT coding probability 2.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGEF28-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-428C6.1.1-1:1
3.1 lnc-RP11-428C6.1.1-2:1
4.0 lnc-RP11-428C6.1.1-2:1
4.1 lnc-RP11-428C6.1.1-2:1
5.0 lnc-RP11-428C6.1.1-2:1
5.1 lnc-MAP1B-30:1
5.2 lnc-ARHGEF28-2:1