Transcript: lnc-ARHGEF5-1:2

Basic information

LNCipedia transcript ID: lnc-ARHGEF5-1:2 
LNCipedia gene ID: lnc-ARHGEF5-1
Location (hg19): chr7:144084026-144088050
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 497 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014226; NONHSAT123925
Alternative gene names: XLOC_006281; linc-CNTNAP2-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.6388 non-coding 
CPAT coding probability 1.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGEF5-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARHGEF5-1:1
3.1 lnc-ARHGEF5-1:2
4.0 lnc-ARHGEF5-1:2
4.1 lnc-ARHGEF5-1:2
5.0 lnc-ARHGEF5-1:2
5.1 lnc-ADCK2-57:1
5.2 lnc-ARHGEF5-1:2