Transcript: lnc-ARHGEF5-2:3

Basic information

LNCipedia transcript ID: lnc-ARHGEF5-2:3 
LNCipedia gene ID: lnc-ARHGEF5-2
Location (hg19): chr7:144740923-144857358
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 697 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014228; NONHSAT123938
Alternative gene names: XLOC_006283; linc-CNTNAP2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -230.9668 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGEF5-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARHGEF5-2:3
3.1 lnc-ARHGEF5-2:3
4.0 lnc-ARHGEF5-2:3
4.1 lnc-ARHGEF5-2:3
5.0 lnc-ARHGEF5-2:3
5.1 lnc-ADCK2-62:4
5.2 lnc-ARHGEF5-2:3