Transcript: lnc-ARID4A-3:2

Basic information

LNCipedia transcript ID: lnc-ARID4A-3:2 
LNCipedia gene ID: lnc-ARID4A-3
Ensembl Gene ID: ENSG00000279636
Ensembl Transcript ID: ENST00000627309
Location (hg19): chr14:58754751-58755865
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1115 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000627309.1
Alternative gene names: ENSG00000279636.2; LINC00216; AL132989.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -2.6023 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARID4A-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ARID4A-3:2
4.1 lnc-ARID4A-3:2
5.0 lnc-ARID4A-3:2
5.1 lnc-ACTR10-11:2
5.2 lnc-ARID4A-3:2