Transcript: lnc-ARL13A-1:1

Basic information

LNCipedia transcript ID: lnc-ARL13A-1:1 
LNCipedia gene ID: lnc-ARL13A-1
Location (hg19): chrX:100258821-100262956
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3210 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000514614; TCONS_00017001; NONHSAT137909
Alternative gene names: ENSG00000250499; XLOC_008024; linc-TMEM35


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.2729 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARL13A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARL13A-1:1
3.1 lnc-ARL13A-1:1
4.0 lnc-ARL13A-1:1
4.1 lnc-ARL13A-1:1
5.0 lnc-ARL13A-1:1
5.1 lnc-TEX13C-268:1
5.2 lnc-ARL13A-1:1