Transcript: lnc-ARL13A-3:1

Basic information

LNCipedia transcript ID: lnc-ARL13A-3:1 
LNCipedia gene ID: lnc-ARL13A-3
Location (hg19): chrX:100160842-100162315
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1474 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT137905; FPKM1_group_34938_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.915 non-coding 
CPAT coding probability 1.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARL13A-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARL13A-3:1
4.0 lnc-ARL13A-3:1
4.1 lnc-ARL13A-3:1
5.0 lnc-ARL13A-3:1
5.1 lnc-TEX13C-269:1
5.2 lnc-ARL13A-3:1