Transcript: lnc-ARL13B-1:1

Basic information

LNCipedia transcript ID: lnc-ARL13B-1:1 
LNCipedia gene ID: lnc-ARL13B-1
Location (hg19): chr3:93795186-93800665
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 470 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000494128.1; RP13-503K1.4-001; OTTHUMT00000352941.1; NONHSAT090731
Alternative gene names: ENSG00000243497.1; RP13-503K1.4; OTTHUMG00000159026.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.5378 non-coding 
CPAT coding probability 7.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARL13B-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARL13B-1:1
4.0 lnc-ARL13B-1:1
4.1 lnc-ARL13B-1:1
5.0 lnc-ARL13B-1:1
5.1 lnc-CRYBG3-16:6
5.2 lnc-ARL13B-1:1