Transcript: lnc-ARL14EP-3:4

Basic information

LNCipedia transcript ID: lnc-ARL14EP-3:4 
LNCipedia gene ID: lnc-ARL14EP-3
Location (hg19): chr11:30751862-30826828
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3518 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000001906.1|ENCT00000065579.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.5771 non-coding 
CPAT coding probability 1.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARL14EP-3:4 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C11orf46-3:7
5.0 lnc-C11orf46-3:7
5.1 lnc-QSER1-22:4
5.2 lnc-ARL14EP-3:4