Transcript: lnc-ARL4C-3:1

Basic information

LNCipedia transcript ID: lnc-ARL4C-3:1 
LNCipedia gene ID: lnc-ARL4C-3
Ensembl Gene ID: ENSG00000226542
Ensembl Transcript ID: ENST00000444926
Location (hg19): chr2:235993466-235997230
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 691 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003516; ENST00000444926; ENST00000444926.1; AC114814.4-001; OTTHUMT00000329757.1; NONHSAT077559
Alternative gene names: XLOC_002524; linc-ARL4C-2; ENSG00000226542; AC114814.4; ENSG00000226542.1; OTTHUMG00000153145.1; AC114814.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.5702 non-coding 
CPAT coding probability 3.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARL4C-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARL4C-3:1
3.1 lnc-ARL4C-3:1
4.0 lnc-ARL4C-3:1
4.1 lnc-ARL4C-3:1
5.0 lnc-ARL4C-3:1
5.1 lnc-GBX2-5:1
5.2 lnc-ARL4C-3:1