Transcript: lnc-ARL5B-1:1

Basic information

LNCipedia transcript ID: lnc-ARL5B-1:1 
LNCipedia gene ID: lnc-ARL5B-1
Location (hg19): chr10:18941165-18943952
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1615 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000499111; TCONS_00017795; NONHSAT011648
Alternative gene names: ENSG00000246675; XLOC_008405; linc-ARL5B; AL512641.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.4116 non-coding 
CPAT coding probability 1.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARL5B-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARL5B-1:1
3.1 lnc-ARL5B-1:1
4.0 lnc-ARL5B-1:1
4.1 lnc-ARL5B-1:1
5.0 lnc-ARL5B-1:1
5.1 lnc-NPY4R2-323:2
5.2 lnc-ARL5B-1:1