Transcript: lnc-ARMCX5-2:1

Basic information

LNCipedia transcript ID: lnc-ARMCX5-2:1 
LNCipedia gene ID: lnc-ARMCX5-2
Location (hg19): chrX:101804893-101826623
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3617 bp
Exons: 17
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000360035.2; NXF4-001; OTTHUMT00000095720.1
Alternative gene names: ENSG00000196970.3; NXF4; OTTHUMG00000039695.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.8991 non-coding 
CPAT coding probability 99.96% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ARMCX5-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARMCX5-1:1
4.0 lnc-ARMCX5-2:1
4.1 lnc-ARMCX5-2:1
5.0 lnc-ARMCX5-2:1
5.1 lnc-TEX13C-247:1
5.2 lnc-ARMCX5-2:1