Transcript: lnc-ARNTL-5:1

Basic information

LNCipedia transcript ID: lnc-ARNTL-5:1 
LNCipedia gene ID: lnc-ARNTL-5
Location (hg19): chr11:13693999-13694214
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 216 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr11_1881_+
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.8998 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARNTL-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARNTL-5:1
4.0 lnc-ARNTL-5:1
4.1 lnc-ARNTL-5:1
5.0 lnc-ARNTL-5:1
5.1 lnc-AMPD3-48:1
5.2 lnc-ARNTL-5:1