Transcript: lnc-ARPC3-2:4

Basic information

LNCipedia transcript ID: lnc-ARPC3-2:4 
LNCipedia gene ID: lnc-ARPC3-2
Ensembl Gene ID: ENSG00000258210
Ensembl Transcript ID: ENST00000550231
Location (hg19): chr12:110825268-110883353
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 946 bp
Exons: 5
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000550231.1
Alternative gene names: ENSG00000258210.1; RP11-478C19.2; AC144548.2; AC144548.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1877.836 coding 
CPAT coding probability 72.11% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ARPC3-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPN3-2:4
4.0 lnc-RP11-478C19.2.1-2:5
4.1 lnc-RP11-478C19.2.1-2:5
5.0 lnc-RP11-478C19.2.1-2:5
5.1 lnc-GPN3-2:10
5.2 lnc-ARPC3-2:4