Transcript: lnc-ARVCF-4:2

Basic information

LNCipedia transcript ID: lnc-ARVCF-4:2 
LNCipedia gene ID: lnc-ARVCF-4
Ensembl Gene ID: ENSG00000236540
Ensembl Transcript ID: ENST00000609191
Location (hg19): chr22:20050557-20058066
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 828 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609191.1
Alternative gene names: ENSG00000236540.3; AC006547.13; ENSG00000236540.7; AC006547.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.981 non-coding 
CPAT coding probability 18.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARVCF-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRMT2A-2:2
4.0 lnc-ARVCF-4:2
4.1 lnc-ARVCF-4:2
5.0 lnc-ARVCF-4:2
5.1 lnc-RTN4R-9:2
5.2 lnc-ARVCF-4:2