Transcript: lnc-ARVCF-4:5

Basic information

LNCipedia transcript ID: lnc-ARVCF-4:5 
LNCipedia gene ID: lnc-ARVCF-4
Ensembl Gene ID: ENSG00000236540
Ensembl Transcript ID: ENST00000600617
Location (hg19): chr22:20050534-20057977
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 878 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT083471; ENST00000600617.1; ENST00000600617.5
Alternative gene names: ENSG00000236540.3; AC006547.13; ENSG00000236540.7; AC006547.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.9141 non-coding 
CPAT coding probability 8.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARVCF-4:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRMT2A-2:5
4.0 lnc-ARVCF-4:5
4.1 lnc-ARVCF-4:5
5.0 lnc-ARVCF-4:5
5.1 lnc-RTN4R-9:5
5.2 lnc-ARVCF-4:5