Transcript: lnc-ARVCF-4:6

Basic information

LNCipedia transcript ID: lnc-ARVCF-4:6 
LNCipedia gene ID: lnc-ARVCF-4
Location (hg19): chr22:20050534-20057797
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 701 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT083468; ENST00000596334.1
Alternative gene names: ENSG00000236540.3; AC006547.13


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.9141 non-coding 
CPAT coding probability 8.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARVCF-4:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRMT2A-2:6
4.0 lnc-ARVCF-4:6
4.1 lnc-ARVCF-4:6
5.0 lnc-ARVCF-4:6
5.1 lnc-RTN4R-9:6
5.2 lnc-ARVCF-4:6