Transcript: lnc-ASAP1-1:1

Basic information

LNCipedia transcript ID: lnc-ASAP1-1:1 
LNCipedia gene ID: lnc-ASAP1-1
Location (hg19): chr8:131440032-131455971
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 303 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00015499; NONHSAT129155
Alternative gene names: XLOC_007222; linc-ASAP1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 48.4043 non-coding 
CPAT coding probability 18.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ASAP1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ASAP1-1:1
3.1 lnc-ASAP1-1:1
4.0 lnc-ASAP1-1:1
4.1 lnc-ASAP1-1:1
5.0 lnc-ASAP1-1:1
5.1 lnc-FAM84B-45:1
5.2 lnc-ASAP1-1:1