Transcript: lnc-ASAP2-1:1

Basic information

LNCipedia transcript ID: lnc-ASAP2-1:1 
LNCipedia gene ID: lnc-ASAP2-1
Ensembl Gene ID: ENSG00000240980
Ensembl Transcript ID: ENST00000474561
Location (hg19): chr2:9283295-9286235
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 455 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002815; ENST00000474561; ENST00000474561.1; RP11-734K21.4-001; OTTHUMT00000353374.1; NONHSAT069036
Alternative gene names: XLOC_001337; linc-ASAP2-1; ENSG00000240980; RP11-734K21.4; ENSG00000240980.1; OTTHUMG00000159111.1; AC093904.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.1667 non-coding 
CPAT coding probability 4.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASAP2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ASAP2-1:1
3.1 lnc-ASAP2-1:1
4.0 lnc-ASAP2-1:1
4.1 lnc-ASAP2-1:1
5.0 lnc-ASAP2-1:1
5.1 lnc-SNX17-217:1
5.2 lnc-ASAP2-1:1