Transcript: lnc-ASAP2-5:3

Basic information

LNCipedia transcript ID: lnc-ASAP2-5:3 
LNCipedia gene ID: lnc-ASAP2-5
Location (hg19): chr2:9144206-9151299
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2727 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000041742.1|HBMT00000758118.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -21.6508 non-coding 
CPAT coding probability 0.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASAP2-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ASAP2-5:3
5.0 lnc-ASAP2-5:3
5.1 lnc-SNX17-222:3
5.2 lnc-ASAP2-5:3