Transcript: lnc-ASB3-1:2

Basic information

LNCipedia transcript ID: lnc-ASB3-1:2 
LNCipedia gene ID: lnc-ASB3-1
Ensembl Gene ID: ENSG00000228033
Ensembl Transcript ID: ENST00000443237
Location (hg19): chr2:52949815-53137158
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 453 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000443237; ENST00000443237.1; AC010967.2-002; OTTHUMT00000326156.1; NONHSAT070681
Alternative gene names: ENSG00000228033; AC010967.2; ENSG00000228033.1; OTTHUMG00000152413.1; ENSG00000228033.5; AC010967.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -165.8735 non-coding 
CPAT coding probability 4.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASB3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ASB3-1:1
3.1 lnc-ASB3-1:2
4.0 lnc-ASB3-1:2
4.1 lnc-ASB3-1:2
5.0 lnc-ASB3-1:2
5.1 lnc-PPP4R3B-54:10
5.2 lnc-ASB3-1:2