Transcript: lnc-ASB3-3:1

Basic information

LNCipedia transcript ID: lnc-ASB3-3:1 
LNCipedia gene ID: lnc-ASB3-3
Ensembl Gene ID: ENSG00000236837
Ensembl Transcript ID: ENST00000443926
Location (hg19): chr2:52721826-52727890
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 639 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003283; ENST00000443926; ENST00000443926.1; AC139712.4-001; OTTHUMT00000325653.1; NONHSAT070673
Alternative gene names: XLOC_002095; linc-NRXN1-4; ENSG00000236837; AC139712.4; ENSG00000236837.1; OTTHUMG00000152267.1; AC139712.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.9603 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASB3-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ASB3-3:1
3.1 lnc-ASB3-3:1
4.0 lnc-ASB3-3:1
4.1 lnc-ASB3-3:1
5.0 lnc-ASB3-3:1
5.1 lnc-PPP4R3B-56:1
5.2 lnc-ASB3-3:1