Transcript: lnc-ASB4-1:1

Basic information

LNCipedia transcript ID: lnc-ASB4-1:1 
LNCipedia gene ID: lnc-ASB4-1
Ensembl Gene ID: ENSG00000233942
Ensembl Transcript ID: ENST00000416593
Location (hg19): chr7:95101147-95103310
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 534 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013046; ENST00000416593; ENST00000416593.1; AC004012.1-001; OTTHUMT00000334072.1; NONHSAT122079
Alternative gene names: XLOC_006177; linc-ASB4-1; ENSG00000233942; AC004012.1; ENSG00000233942.1; OTTHUMG00000154143.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.1587 non-coding 
CPAT coding probability 2.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASB4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ASB4-1:1
3.1 lnc-ASB4-1:1
4.0 lnc-ASB4-1:1
4.1 lnc-ASB4-1:1
5.0 lnc-ASB4-1:1
5.1 lnc-LAMTOR4-78:3
5.2 lnc-ASB4-1:1