Transcript: lnc-ASB4-3:2

Basic information

LNCipedia transcript ID: lnc-ASB4-3:2 
LNCipedia gene ID: lnc-ASB4-3
Ensembl Gene ID: ENSG00000231170
Ensembl Transcript ID: ENST00000416502
Location (hg19): chr7:95225994-95236456
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 307 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013047; ENST00000416502.1; AC002451.3-002; OTTHUMT00000334078.1; ENST00000416502.5
Alternative gene names: XLOC_006178; linc-DYNC1I1-2; ENSG00000231170.1; AC002451.3; OTTHUMG00000154145.1; ENSG00000231170.5; AC002451.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.4648 non-coding 
CPAT coding probability 13.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASB4-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ASB4-3:2
3.1 lnc-ASB4-3:2
4.0 lnc-ASB4-3:2
4.1 lnc-ASB4-3:2
5.0 lnc-ASB4-3:2
5.1 lnc-LAMTOR4-75:3
5.2 lnc-ASB4-3:2