Transcript: lnc-ASCL1-6:6

Basic information

LNCipedia transcript ID: lnc-ASCL1-6:6 
LNCipedia gene ID: lnc-ASCL1-6
Ensembl Gene ID: ENSG00000257860
Ensembl Transcript ID: ENST00000547418
Location (hg19): chr12:103545620-103562012
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 852 bp
Exons: 7
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000547418.5
Alternative gene names: ENSG00000257860.5; RP11-552I14.1; AC068643.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -32.364 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASCL1-6:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-552I14.1.1-1:16
4.1 lnc-RP11-552I14.1.1-1:16
5.0 lnc-RP11-552I14.1.1-1:16
5.1 lnc-STAB2-6:6
5.2 lnc-ASCL1-6:6