Transcript: lnc-ASH1L-2:1

Basic information

LNCipedia transcript ID: lnc-ASH1L-2:1 
LNCipedia gene ID: lnc-ASH1L-2
Location (hg19): chr1:155579339-155580171
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 448 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000456382.1; RP11-29H23.4-001; OTTHUMT00000039461.1; NONHSAT006747
Alternative gene names: ENSG00000232519.1; RP11-29H23.4; OTTHUMG00000014027.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.5602 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASH1L-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ASH1L-2:1
4.0 lnc-ASH1L-2:1
4.1 lnc-ASH1L-2:1
5.0 lnc-ASH1L-2:1
5.1 lnc-RIT1-9:1
5.2 lnc-ASH1L-2:1