Transcript: lnc-ASPSCR1-1:1

Basic information

LNCipedia transcript ID: lnc-ASPSCR1-1:1 
LNCipedia gene ID: lnc-ASPSCR1-1
Ensembl Gene ID: ENSG00000235296
Ensembl Transcript ID: ENST00000415556
Location (hg19): chr17:79899745-79905477
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 691 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415556.1; AC137723.5-001; OTTHUMT00000335007.1
Alternative gene names: ENSG00000235296.1; AC137723.5; OTTHUMG00000154387.1; AC145207.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.1619 non-coding 
CPAT coding probability 3.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASPSCR1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ASPSCR1-1:1
4.0 lnc-ASPSCR1-1:1
4.1 lnc-ASPSCR1-1:1
5.0 lnc-ASPSCR1-1:1
5.1 lnc-TSPAN10-30:5
5.2 lnc-ASPSCR1-1:1