Transcript: lnc-ASPSCR1-1:8

Basic information

LNCipedia transcript ID: lnc-ASPSCR1-1:8 
LNCipedia gene ID: lnc-ASPSCR1-1
Location (hg19): chr17:79899805-79909044
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4038 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000235296.1|MICT00000156754.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 21.1619 non-coding 
CPAT coding probability 74.22% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ASPSCR1-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ASPSCR1-1:8
5.0 lnc-ASPSCR1-1:8
5.1 lnc-TSPAN10-30:8
5.2 lnc-ASPSCR1-1:8