Transcript: lnc-ASPSCR1-1:9

Basic information

LNCipedia transcript ID: lnc-ASPSCR1-1:9 
LNCipedia gene ID: lnc-ASPSCR1-1
Location (hg19): chr17:79905874-79906628
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 680 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT056605
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 38.3121 non-coding 
CPAT coding probability 10.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASPSCR1-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ASPSCR1-3:1
4.0 lnc-ASPSCR1-3:1
4.1 lnc-ASPSCR1-1:9
5.0 lnc-ASPSCR1-1:9
5.1 lnc-TSPAN10-30:9
5.2 lnc-ASPSCR1-1:9