Transcript: lnc-ASTN2-2:2

Basic information

LNCipedia transcript ID: lnc-ASTN2-2:2 
LNCipedia gene ID: lnc-ASTN2-2
Location (hg19): chr9:118969286-118970488
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 669 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000436470.1; RP11-58C3.2-001; OTTHUMT00000053797.1; NONHSAT134434
Alternative gene names: ENSG00000224684.1; RP11-58C3.2; OTTHUMG00000020553.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -291.629 non-coding 
CPAT coding probability 1.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASTN2-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAPPA-AS1-2:1
4.0 lnc-PAPPA-AS1-2:1
4.1 lnc-PAPPA-AS1-2:1
5.0 lnc-PAPPA-AS1-2:1
5.1 lnc-TNFSF8-22:1
5.2 lnc-ASTN2-2:2