Transcript: lnc-ATG101-3:1

Basic information

LNCipedia transcript ID: lnc-ATG101-3:1 
LNCipedia gene ID: lnc-ATG101-3
Location (hg19): chr12:52478528-52486069
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 449 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: NONHSAT028331; ENST00000575924.1
Alternative gene names: ENSG00000272724.1; RP1-288H2.4; OR7E47P


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -383.196 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATG101-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C12orf44-3:1
4.0 lnc-C12orf44-3:1
4.1 lnc-C12orf44-3:1
5.0 lnc-C12orf44-3:1
5.1 lnc-NR4A1-3:1
5.2 lnc-ATG101-3:1