Transcript: lnc-ATG2B-15:1

Basic information

LNCipedia transcript ID: lnc-ATG2B-15:1 
LNCipedia gene ID: lnc-ATG2B-15
Location (hg19): chr14:96932561-96940208
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 714 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000554004.1; RP11-872J21.2-001; OTTHUMT00000413409.1; NONHSAT039528
Alternative gene names: ENSG00000258530.1; RP11-872J21.2; OTTHUMG00000171439.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.0348 non-coding 
CPAT coding probability 1.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATG2B-15:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATG2B-1:1
4.0 lnc-ATG2B-1:1
4.1 lnc-ATG2B-1:1
5.0 lnc-ATG2B-1:1
5.1 lnc-TCL1A-18:1
5.2 lnc-ATG2B-15:1