Transcript: lnc-ATG2B-3:5

Basic information

LNCipedia transcript ID: lnc-ATG2B-3:5 
LNCipedia gene ID: lnc-ATG2B-3
Ensembl Gene ID: ENSG00000259036
Ensembl Transcript ID: ENST00000554769
Location (hg19): chr14:96699768-96700438
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 572 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554769.1; RP11-404P21.1-001; OTTHUMT00000413265.1; NONHSAT039508
Alternative gene names: ENSG00000259036.1; RP11-404P21.1; OTTHUMG00000171395.1; AL355102.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.8519 non-coding 
CPAT coding probability 7.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATG2B-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-404P21.6.1-3:1
4.0 lnc-RP11-404P21.6.1-3:1
4.1 lnc-RP11-404P21.6.1-3:1
5.0 lnc-RP11-404P21.6.1-3:1
5.1 lnc-TCL1A-3:1
5.2 lnc-ATG2B-3:5